PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01017369001
Common NameVITISV_031334
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family FAR1
Protein Properties Length: 732aa    MW: 84578.2 Da    PI: 5.1025
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01017369001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR170.54e-22112195189
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                        ++Yn YAke+GF +r+++s ++++++e   + ++C++eg+++ ++ +     ++r+etrtgC a++++++ ++++w+v++++leHnH +
  GSVIVT01017369001 112 NYYNCYAKELGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTIKEAN-----SRRKETRTGCLAMIRLRLVESNRWRVDEVKLEHNHLF 195
                        69****************************************99888.....8999*******************************77 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-19112195IPR004330FAR1 DNA binding domain
PfamPF105513.6E-30317410IPR018289MULE transposase domain
PROSITE profilePS509669.817603639IPR007527Zinc finger, SWIM-type
SMARTSM005753.6E-6614641IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 732 aa     Download sequence    Send to blast
MTDDSTFSPS DDPLSPNPNL EITMEEGSEN SEQLLDNEGN DLENECEQVL ENEGNDLDND  60
CEQVFEIEGN DHENVTDFDT RIVDGENGMS QGKNYLPPVV GMEFESYDDA YNYYNCYAKE  120
LGFAIRVKSS WTKRNSKEKR GAVLCCNCEG FKTIKEANSR RKETRTGCLA MIRLRLVESN  180
RWRVDEVKLE HNHLFDPERA QNSKSHKKMD AGAKRKVEPT LDVEVRTIKL YRTPALDAMS  240
YGNSSSSERE INNHTDQPKR LNLKKGDAQV IYNYFCRVQL TNPNFFYLMD LSDDGHLRNV  300
FWIDSRSRAA YGYFGDVVAF DTVCLSNKYE IPLLAFVGGN HHGQPVLLGC GLLADETPET  360
YIWLFRAWLT CMSGRPPQTI ITDQCKALQS AIAEVFPRAH HRLCLSHVMQ RILEKLGDLQ  420
ENEPFRTALN RTVYDSVKID EFELAWEDMI QRFGIRSHEC LRTLYEDRER WAPVYSKDTF  480
FAGLSTFQQG ESMSSFFNGY VHEQTSLKEF LDMYEFILQK GHQKEAVDDF ESRDSTPTLK  540
TRCFYELQLS NVYTKEIFEK FQGEIEMMSS CISITQLHVN GPIVTYIVKE REGDVNMREV  600
RNFEVMYDKA GAEVRCICSC FNFKGYLCRH AMCVLNYNGL EEIPLQYILS RWRKDFKRLY  660
IPDLGSNNVD ITNPVQWFDH LYRRALQVVE EGMTSQDHYM VAWQAFKESL NKVRLAADKH  720
GKLCFGPGPK N*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4292230.0AM429223.2 Vitis vinifera contig VV78X259035.12, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002263391.20.0PREDICTED: protein FAR1-RELATED SEQUENCE 8 isoform X2
SwissprotQ9S7930.0FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8
TrEMBLA5AL330.0A5AL33_VITVI; Putative uncharacterized protein
STRINGPOPTR_0003s02550.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80010.10.0FAR1-related sequence 8